MmuEX6008643 @ mm9
Exon Skipping
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:19441755-19444003:+
Coord C1 exon
chr7:19441755-19442030
Coord A exon
chr7:19443490-19443768
Coord C2 exon
chr7:19443873-19444003
Length
279 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCATCTTCTCCCAGGAC
3' ss Score
10.62
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACTAGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGACAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTGCAGGATACAG
Seq A exon
GACCCCCAATGGTAACTGTGACCTGCAGGAACTATCCAGTAGGTAGGGTCACACTGACATGCCGGGCTTTTAATCTGTATACCCGTGAGGCCACCCTGGTCTGGCTTCAGGATGGGAAGCCAGTACAGCAGAAAACCTTCAGATCTGAGACCATCCTGCCCAGCGGGGATGGGACCTACCAGGCCCGGGTGTCCATTCGGGTTCTTCCTGGACAGGAACCACAGTTCAGCTGCAACCTGAGGCATGGCAACCATAGCATCATGCAGACAGCTGTCTCTG
Seq C2 exon
GGCATGCTGCTGAGGACAGTCAGGATGTTGCTAGCTCTGCTACAGCTTCAGCTGGATCTGCACTCCCTGTTGTATTGGCGGTGGCACTGGCCAGAGCCAACTGAATCCAGAACACAAAGGACAGGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.128 C2=0.294
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.7=94.6),PF074136=Herpes_UL37_2=FE(59.4=100)
A:
PF074136=Herpes_UL37_2=PD(17.4=28.7),PF0765410=C1-set=WD(100=86.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACACTCTCCAGGCAAC
R:
CTGACTGTCCTCAGCAGCATG
Band lengths:
298-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: