BtaINT0002120 @ bosTau6
Intron Retention
Description
Bos taurus major histocompatibility class I related protein (MIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001127317]
Coordinates
chr23:27725123-27725654:-
Coord C1 exon
chr23:27725595-27725654
Coord A exon
chr23:27725252-27725594
Coord C2 exon
chr23:27725123-27725251
Length
343 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
ATAATAAGGTCCTTTTTCAGGAA
3' ss Score
6.34
Exon sequences
Seq C1 exon
AGCCCCCAGCCGTGAATGTGACCTGCAGCCAGGACTCAGAGGGCATGGTCCACCTCACAG
Seq A exon
GCAAGGCTTTTGGCTTCTTTCCCCGCAGTATCTCAGTGGTCTGGTTTCGGGATGAGGAACCCATGAGCTGGGACGCCCAGGAGTCTGGGGATGTCCTGTCTGATGGGAATGGGACCTACTACACCTGGGAAACTGTAAAAATTCCCCAAGGAGAGGAACAGTGGGTCAAGTGCATTGTGGAACACAGCGGGAATCACAGTTCACACCTCGCACCCTTGGGTGAGACTGGGGTGAGGCTGGAGGCAGTTGTGACCCTGGGAGGGTCAGAGGCCAGGGTCAGGGAGAGGAGAGCAGGTTGTGGCTCTGGGGTGCCCGGGTTGAATATAATAAGGTCCTTTTTCAG
Seq C2 exon
GAAAGACCCTGGTGCACCAGAGATCACGATGGATCGTGAGCATTCCTGTTGCTGTTGTTTTTATCATCGGATTTTGTGTCTATTGTTATATTAAGAAGAGGAAGACAGCATCAGCTACAGGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010166:ENSBTAT00000013413:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCGTGAATGTGACCTG
R:
CTGGCCTCCCTGTAGCTGAT
Band lengths:
184-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]