BtaEX6098532 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility class I related protein (MIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001127317]
Coordinates
chr23:27659363-27725654:-
Coord C1 exon
chr23:27725595-27725654
Coord A exon
chr23:27725123-27725251
Coord C2 exon
chr23:27659363-27659521
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATAATAAGGTCCTTTTTCAGGAA
3' ss Score
6.34
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGCCCCCAGCCGTGAATGTGACCTGCAGCCAGGACTCAGAGGGCATGGTCCACCTCACAG
Seq A exon
GAAAGACCCTGGTGCACCAGAGATCACGATGGATCGTGAGCATTCCTGTTGCTGTTGTTTTTATCATCGGATTTTGTGTCTATTGTTATATTAAGAAGAGGAAGACAGCATCAGCTACAGGGAGGCCAG
Seq C2 exon
AGCCTATTAGACTACAAGACCTGGATCAATTCCAGACGGAACCAACTGATCATAATGGCCTCACACACCCAGAATTTCAGTCCTTGTGTCACACTCCGGCTCCATCAGTTTAACAGGGGAAGCTTAGAATCTGCCGCCAGGAGGCCTGAATTCAGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010166-'4-8,'4-5,6-8=AN
Average complexity
A_C3
Mappability confidence:
50%=100=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.068 C2=0.541
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGCCGTGAATGTG
R:
CCTCCTGGCGGCAGATTCTAA
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]