BtaALTA0000053-1/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3I2]
Coordinates
chr23:27715377-27715963:+
Coord C1 exon
chr23:27715377-27715650
Coord A exon
NA
Coord C2 exon
chr23:27715863-27715963
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGATGGTCGGGGCGGGTCAGGGT
3' ss Score
-3.15
Exon sequences
Seq C1 exon
CCAGGCTCCCACTCCCTGAGCTATTTCTGCACCTGCGTGTCCCGGCCCGGCCTCGGGGAGCCGCGTTTCTTTGCCGTCGGCTACGTGGACCGCACACAGTTCGCGCGGTTCGACAGCGACGCCCCGAATCCGAGAATGGAGCCGCGGGCGCCTTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGATGACACGAGATGCCAAGAAAGCTCAACAGAGAATGCGATTAGCCTTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
Seq A exon
NA
Seq C2 exon
GGTCTCACACCCTCCAGTTTGTGTTTGGCTGCCACGTGGGGCTGGACGGGCGCCTCCTCCGCGGGATCTGGCGGACCGCCTATGACGGTGCGGATTACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001476-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.6=97.8)
A:
NA
C2:
PF0012913=MHC_I=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGAGATGCCAAGAAAGCT
R:
AGCCAAACACAAACTGGAGGG
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development