BtaEX0000085 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3I2]
Coordinates
chr23:27717501-27718202:+
Coord C1 exon
chr23:27717501-27717564
Coord A exon
chr23:27717984-27718016
Coord C2 exon
chr23:27718153-27718202
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTGATACTTTCTTCTCACAGGTG
3' ss Score
10.79
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTCTCCTCATGGTCACTGGAGCTGTGGTGACTGAAGCTGTGATTTGGAGGAAGAAGCATTCAG
Seq A exon
GTGAAGTAGGAAGGGGCTACACTCAGGCTGCAA
Seq C2 exon
GCAATGACGGTGCCCAGGGCTCTGGTGTGCCTCTCACGGTTCTTAAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001476-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.118
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(6.9=9.1)
A:
PF066236=MHC_I_C=FE(37.9=100)
C2:
PF066236=MHC_I_C=PD(51.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCATGGTCACTGGAGC
R:
ACCTTTAAGAACCGTGAGAGGC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development