MmuEX0022285 @ mm10
Exon Skipping
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35473486-35474563:+
Coord C1 exon
chr17:35473486-35473589
Coord A exon
chr17:35473768-35473800
Coord C2 exon
chr17:35474141-35474563
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACATCTTTTCCTCTCACAGGTA
3' ss Score
11.35
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
Seq A exon
GTAGAAAAAGAGGGGACTATGCTCCCGCTCCAG
Seq C2 exon
TGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGTAGCCCAGCCTGCCCTGCACACCAGGACCCTGTCCCTGCATTGCTTGCTCCCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGGATGTGAACTTTATTGTTCATATCCTTGATCTGAGGGTTGATTGACAGGTAAACTAAAGAATTAAGAATACTTAGAGTTTGTGGAGGAAATAAATGGCAGATGGAGAACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTTCCACTGACTCT
R:
GTCCACTCCAGTCAGGTGTCT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types