MmuEX0022285 @ mm9
Exon Skipping
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35610431-35611508:+
Coord C1 exon
chr17:35610431-35610534
Coord A exon
chr17:35610713-35610745
Coord C2 exon
chr17:35611086-35611508
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACATCTTTTCCTCTCACAGGTA
3' ss Score
11.35
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
Seq A exon
GTAGAAAAAGAGGGGACTATGCTCCCGCTCCAG
Seq C2 exon
TGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGTAGCCCAGCCTGCCCTGCACACCAGGACCCTGTCCCTGCATTGCTTGCTCCCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGGATGTGAACTTTATTGTTCATATCCTTGATCTGAGGGTTGATTGACAGGTAAACTAAAGAATTAAGAATACTTAGAGTTTGTGGAGGAAATAAATGGCAGATGGAGAACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235-'8-10,'8-6,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF066236=MHC_I_C=FE(38.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTTCCACTGACTCT
R:
GTCCACTCCAGTCAGGTGTCT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: