MmuINT0098795 @ mm10
Intron Retention
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18856406-18858419:+
Coord C1 exon
chr7:18856406-18856681
Coord A exon
chr7:18856682-18858140
Coord C2 exon
chr7:18858141-18858419
Length
1459 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTTTCTCATCTTCTCCCAGGAC
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACTAGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGACAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTGCAGGATACAG
Seq A exon
GTACTGACAAGGGGCTCTGTCTCTCCATTAGCTTCTTTCCCTGGGATGTTCTGAATCTAGAAGGAGACAAAGCTAGTTATGAACAATTGGGCTTGGATGGTAAGATGTTTGATCAGAGTTAAGACAGGACAGAAGGATCCAGCCATGGAGCCGGACTACAGATTCAAACGCAAGCTACCCAACCCATGTTCCATATCCAAGGTCCTTCTCCTGAAGCTTAGCTCTTTGTTTTTGTTTTTTAAGATTTATTTATTTATTTAATGTATATGAGTACTCTGTCTTCATGCACACCAGAAGAAAGCATCAGATACCATTACAGAGTCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTCTGCTTTGTTTGAGAAAGTTTTCTGTTTTTGAGACAAGGCTACATAGCCAAGGTCAAACTCCAGGTCCTGCATTTGCCTCTTGAATGCTTGGATCACAGGTATGCACAGCTCTGCAAGGTCCTTTAAGGTGACAGTCAAAGTTGTTCCTTGGCTAAATCTCATTCATGATTTTAAAAAAAGGAGAAGGAGAGGAGAGGGACAGGGAGAGGAAGGGGGAGGGGGAAGGGAGAAGGAAGAGAGGGAGAAGGAGGAGAGGGGGGAGAGAGAGGGAGAGAGAGGGGGAAAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGGGAGAGGGGAGGAGAGGGGGGAGAGAGGGAGAAGGAGAGAGAGAGAGAGGGAGAGGGGGGAGAAAGGGGGAGAGGGGAGAAAGGGGAAGAGAGGGGAAGAGGGAGAGGGGGAGAGAGGGGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGGGAGGGAGAGAGGGAGGAGAGGGAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGAAGAGAGAGAGAGAGAGAAAGAATTCCCCCTTGAAATGGTTAGGGTAGACAGTGAAAATGCTGTTAACCAAAAATCCTCATGAGCAAGTCCAAGGGTCAAGCCAAGAGGCAAAGAATTAGAGTTACAGTTTGGCAGCACCTCTCTGTCTCCTGGAGTGCATGACACCAGCTTTGTGGTACAAAGATTGTCAGCCATTTGTCGATTAGAGAAGACCACTGTCCCTACAAAGTCATCTACTCATGTACTAGAAGGCTGATCATCTGACCTCATGCAGTCCCCTGGCAGACAAGGGCCTGCTACCTTCCAGTATTCAGGCATCACTGGAGCTGTGTGCTGTACTCCCCGCACTTACCTAGGGGTGGGGAGAGGCACATATGCACATTGTGGTTGTGTAGTTTCTGCCCTCCGCATCCCACCACTCAGCAGCTCTTTCTCATCTTCTCCCAG
Seq C2 exon
GACCCCCAATGGTAACTGTGACCTGCAGGAACTATCCAGTAGGTAGGGTCACACTGACATGCCGGGCTTTTAATCTGTATACCCGTGAGGCCACCCTGGTCTGGCTTCAGGATGGGAAGCCAGTACAGCAGAAAACCTTCAGATCTGAGACCATCCTGCCCAGCGGGGATGGGACCTACCAGGCCCGGGTGTCCATTCGGGTTCTTCCTGGACAGGAACCACAGTTCAGCTGCAACCTGAGGCATGGCAACCATAGCATCATGCAGACAGCTGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987:ENSMUST00000072386:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.7=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCAGAACTTCCTCACCT
R:
GGGCAGGATGGTCTCAGATCT
Band lengths:
356-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types