MmuINT0098795 @ mm9
Intron Retention
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:19441755-19443768:+
Coord C1 exon
chr7:19441755-19442030
Coord A exon
chr7:19442031-19443489
Coord C2 exon
chr7:19443490-19443768
Length
1459 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTTTCTCATCTTCTCCCAGGAC
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACTAGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGACAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTGCAGGATACAG
Seq A exon
GTACTGACAAGGGGCTCTGTCTCTCCATTAGCTTCTTTCCCTGGGATGTTCTGAATCTAGAAGGAGACAAAGCTAGTTATGAACAATTGGGCTTGGATGGTAAGATGTTTGATCAGAGTTAAGACAGGACAGAAGGATCCAGCCATGGAGCCGGACTACAGATTCAAACGCAAGCTACCCAACCCATGTTCCATATCCAAGGTCCTTCTCCTGAAGCTTAGCTCTTTGTTTTTGTTTTTTAAGATTTATTTATTTATTTAATGTATATGAGTACTCTGTCTTCATGCACACCAGAAGAAAGCATCAGATACCATTACAGAGTCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTCTGCTTTGTTTGAGAAAGTTTTCTGTTTTTGAGACAAGGCTACATAGCCAAGGTCAAACTCCAGGTCCTGCATTTGCCTCTTGAATGCTTGGATCACAGGTATGCACAGCTCTGCAAGGTCCTTTAAGGTGACAGTCAAAGTTGTTCCTTGGCTAAATCTCATTCATGATTTTAAAAAAAGGAGAAGGAGAGGAGAGGGACAGGGAGAGGAAGGGGGAGGGGGAAGGGAGAAGGAAGAGAGGGAGAAGGAGGAGAGGGGGGAGAGAGAGGGAGAGAGAGGGGGAAAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGGGAGAGGGGAGGAGAGGGGGGAGAGAGGGAGAAGGAGAGAGAGAGAGAGGGAGAGGGGGGAGAAAGGGGGAGAGGGGAGAAAGGGGAAGAGAGGGGAAGAGGGAGAGGGGGAGAGAGGGGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGAGGAGAGGGGGAGGGAGAGAGGGAGGAGAGGGAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGAAGAGAGAGAGAGAGAGAAAGAATTCCCCCTTGAAATGGTTAGGGTAGACAGTGAAAATGCTGTTAACCAAAAATCCTCATGAGCAAGTCCAAGGGTCAAGCCAAGAGGCAAAGAATTAGAGTTACAGTTTGGCAGCACCTCTCTGTCTCCTGGAGTGCATGACACCAGCTTTGTGGTACAAAGATTGTCAGCCATTTGTCGATTAGAGAAGACCACTGTCCCTACAAAGTCATCTACTCATGTACTAGAAGGCTGATCATCTGACCTCATGCAGTCCCCTGGCAGACAAGGGCCTGCTACCTTCCAGTATTCAGGCATCACTGGAGCTGTGTGCTGTACTCCCCGCACTTACCTAGGGGTGGGGAGAGGCACATATGCACATTGTGGTTGTGTAGTTTCTGCCCTCCGCATCCCACCACTCAGCAGCTCTTTCTCATCTTCTCCCAG
Seq C2 exon
GACCCCCAATGGTAACTGTGACCTGCAGGAACTATCCAGTAGGTAGGGTCACACTGACATGCCGGGCTTTTAATCTGTATACCCGTGAGGCCACCCTGGTCTGGCTTCAGGATGGGAAGCCAGTACAGCAGAAAACCTTCAGATCTGAGACCATCCTGCCCAGCGGGGATGGGACCTACCAGGCCCGGGTGTCCATTCGGGTTCTTCCTGGACAGGAACCACAGTTCAGCTGCAACCTGAGGCATGGCAACCATAGCATCATGCAGACAGCTGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987-Mill2:NM_153760:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.7=94.6),PF074136=Herpes_UL37_2=FE(59.4=100)
A:
NA
C2:
PF074136=Herpes_UL37_2=PD(17.4=28.7),PF0765410=C1-set=WD(100=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCAGAACTTCCTCACCT
R:
GGGCAGGATGGTCTCAGATCT
Band lengths:
356-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: