HsaINT0102809 @ hg19
Intron Retention
Gene
ENSG00000231225 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:7090]
Coordinates
chr6:31378849-31380002:+
Coord C1 exon
chr6:31378849-31379136
Coord A exon
chr6:31379137-31379723
Coord C2 exon
chr6:31379724-31380002
Length
587 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CTCTGCCCTTTCTTCTCCAGTGC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAACAGCACCAGGAGCTCCCAGCATTTCTACTACGATGGGGAGCTCTTCCTCTCCCAAAACCTGGAGACTGAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTGGCCATGAACGTCAGGAATTTCTTGAAGGAAGATGCCATGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGCCTGCAGGAACTACGGCGATATCTAGAATCCGGCGTAGTCCTGAGGAGAACAG
Seq A exon
GTACCGACGCTGGCCAGGGGCTCTCCTCTCCCTCCAATTCTGCTAGAGTTGCCTCACCTCCCAGATGTGTCCAGGGAAACCCTCCCTGTGCTATGGATGAAGGCATTTCCTGTTGGCACATCGTGTCCTGATTTTCCTCTATTGTTAGAGCCACTGGATAAAGACAGAGGGTCAGGGACTGGACCATCCAGTGTTGTAATCAGGGCAAGTAGAGGACCCTCCGACAGAATCCTGAGCCTGTGGTGGGTGTCAGGCAGGAGAGGAAGCCTTCAGGGCCAGGGCTGCCCCCTCTGCCTCCCAGCCTGCCCATCCTGGAGAGTTCCCTCCTGGCCCCACAACCCAGGAGTCCACCCCTGACATCCCCCTCCTCAGCATCAATGTGGGGATCCCAGAGCCTGAGGCCACAGTCCCAAGGCCCATCCTCCTGCCAGCCTGGAAGAACTGGGCCCCAGAGTGAGGACAGACTTGCAGGTCAGGGGTCCCGGAGGGCTTCAGCCAGAGTGAGAACAGTGAAGAGAAACAGCCCTGTTCCTCTCCCCTCCTTAGAGGGGAGCAGGGCTTCACTGGCTCTGCCCTTTCTTCTCCAG
Seq C2 exon
TGCCCCCCATGGTGAATGTCACCCGCAGCGAGGCCTCAGAGGGCAACATCACCGTGACATGCAGGGCTTCCAGCTTCTATCCCCGGAATATCATACTGACCTGGCGTCAGGATGGGGTATCTTTGAGCCACGACACCCAGCAGTGGGGGGATGTCCTGCCTGATGGGAATGGAACCTACCAGACCTGGGTGGCCACCAGGATTTGCCGAGGAGAGGAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCACAGCACTCACCCTGTGCCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231225-MICA:NM_000247:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCTATGCATGCAGACTG
R:
CAGGGTGAGTGCTGTGATTCC
Band lengths:
344-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)