MmuEX0029032 @ mm10
Exon Skipping
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18839966-18856681:+
Coord C1 exon
chr7:18839966-18840091
Coord A exon
chr7:18855940-18856203
Coord C2 exon
chr7:18856406-18856681
Length
264 bp
Sequences
Splice sites
3' ss Seq
CCCATCTCCTCCTCCCTCAGGAA
3' ss Score
10.62
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTTGCACAAAACTCCATTTGAGAAAAATGAAAGCCAGTTCTGGAAAGCCCAGAGAATTCAGACCAGCAGTCCTACTGTTGATCTTAGGGCTGCTCCTTAGAGACTCACGGGGATCCAGCATCCAAG
Seq A exon
GAACCCACACTCTGCGCTATAATGTCAGAGCCCATTCTCTGGAGGGGTCTGAGAAGACCCAGCTCCTGGTCCTAATATACGTAGATGAAGAGCTCTTCCTGAAATACAATGGAGACAGCAGGGAGACAGAGCCCTTGGGATGCTGGATTAAGGGCCATGGGGGAAATGAGACCTGTGCAAGAGAGACTAACAATCTGTTGAAGGTGGAAGAGAAACTCAGGGGGATGATGGCTGAGGTTATAAACCAGAAGAGTCAGGAGGAAG
Seq C2 exon
GCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACTAGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGACAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTGCAGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987_MULTIEX1-4/10=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.071 C2=0.032
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(49.7=98.9)
C2:
PF0012913=MHC_I=PD(49.7=94.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTTAGAGACTCACGGG
R:
CCTGCAGACCGTTTCTCAAGG
Band lengths:
306-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types