RnoEX0054448 @ rn6
Exon Skipping
Gene
ENSRNOG00000057645 | Micb
Description
MHC class I polypeptide-related sequence B [Source:RGD Symbol;Acc:1564508]
Coordinates
chr1:79754587-79770129:+
Coord C1 exon
chr1:79754587-79754704
Coord A exon
chr1:79769499-79769762
Coord C2 exon
chr1:79769966-79770129
Length
264 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTCCTCCTCCCTCAGGAA
3' ss Score
11.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGTATGTGCCCACACAAAGGAGGAAAATGGAAGCCAGTTCTGGAACAGCAGGACCAGCAGTCCTACTGTTGATCTTAGCGCTGCTCCTGACAGAGTCACAGGGATCCAGGAGCCAGG
Seq A exon
GAACCCACACTCTGCGCTATGATGTCACAGCCTGTTTTCTGGAGGGCTCTGAGCAGACCAGGCTCCTGGTCCTAATATACGTAGACGATGAGCTCTTCCTGAGGTACAATGGAGACAGGAGGAGTGCAAAGCCCTGGGCATGCTGGATTAAGGGCCATGGGGGAGATGAGACGTGTACAAGAGAGGCTGAGAATCTGCCGAAGGAGGAGGAGAGACTCAGGGAGATGATGGCTGATATGATAAACCAGAAGGGCCATGACAAAG
Seq C2 exon
GCCCATACACTCTTCAGGCAACCCTGGACTGTGAGCTTCAAAGAAACGGAAGCACTAGAGGCTTCTGGCACCTGGGCTACGAAGGGCGGAACCTCCTCACCTTCGACCAGAAGACTCTCACATGGACAATGGATGTGCCCTTCACCCAGCAGAAGAAGACGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057645-'0-4,'0-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.258 C2=0.036
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.0=98.9)
C2:
PF0012913=MHC_I=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCACACAAAGGAGGAAA
R:
GAACGTCTTCTTCTGCTGGGT
Band lengths:
276-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]