BtaEX0000371 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility class I related protein (MIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001127317]
Coordinates
chr23:27726236-27729750:-
Coord C1 exon
chr23:27729627-27729750
Coord A exon
chr23:27726748-27727008
Coord C2 exon
chr23:27726236-27726499
Length
261 bp
Sequences
Splice sites
3' ss Seq
TGTGGTTCCTCCTTCCCCAGGAT
3' ss Score
10.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCGCCAGCTTTTCTTCGGTCCCGGAGCCTCTGGCAGGGAAAGAAGATCTGGGCCATGGGGCTCTCTCATGTCTGGCTGTTTCTAGCCCACGCTGCCTTTTTTGTGCTCCTGGGTAACGCCGCCG
Seq A exon
GATCCCACAGTCTTTTATACAACATGACTGTGCTTTCCCGGGATGGCTTTGTGCAGTCCAGGTTTTTTGCTGAAGGATACTTGGATCGTCAGGCCTTCCTGCACTATGATCACAAAAAAGGCAGGGCAGAGCCCTGGGGACGGTGGCCTGAAAAACTGGCAGCAGAGACGTGGGAGACAGAGACCATGGACTTGAATGAGAGCTGGAAGGAGCTCAGAAAACTTCTAGCAGAAATCCTGTCCCTGCAGGAGGAGAAAGGAG
Seq C2 exon
GCTTACATTCCCTCCAGGAGACCGTGGGCTGTGATATCAATGAAGACAGCCACCCCCAGGGCTTCCGGCTTCTCTACTTCAATGGGGAGCTCCTCCTCTCCTGCTACCCGGAGCCCCACGGATGTACCCTGCCCCAGTCCTCGGCTCGGACCTTGGCCATGGAAATGGAGTTAAGCAAGCATTACCAGGCCCACGTGCAGGGAGAACTTTGTAGGAGACTGCGGAGCTACCTAGAATCCTGGCCGGGCTTCACGGAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010166-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(51.8=98.9)
C2:
PF0012913=MHC_I=PD(47.6=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAAAGAAGATCTGGGC
R:
ACAAAGTTCTCCCTGCACGTG
Band lengths:
304-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development