MmuINT0098794 @ mm10
Intron Retention
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18855940-18856681:+
Coord C1 exon
chr7:18855940-18856203
Coord A exon
chr7:18856204-18856405
Coord C2 exon
chr7:18856406-18856681
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCTGCCTGGGGCGGGCCAGGCC
3' ss Score
1.63
Exon sequences
Seq C1 exon
GAACCCACACTCTGCGCTATAATGTCAGAGCCCATTCTCTGGAGGGGTCTGAGAAGACCCAGCTCCTGGTCCTAATATACGTAGATGAAGAGCTCTTCCTGAAATACAATGGAGACAGCAGGGAGACAGAGCCCTTGGGATGCTGGATTAAGGGCCATGGGGGAAATGAGACCTGTGCAAGAGAGACTAACAATCTGTTGAAGGTGGAAGAGAAACTCAGGGGGATGATGGCTGAGGTTATAAACCAGAAGAGTCAGGAGGAAG
Seq A exon
GTAAGTGTGGAGAGCCAGAGGTACACAAATCCCATCTATGATCCCTAAGCCATGATTCTGGGCAGGGCACAGCCAAACTGAATTGAGTAAAGCAACAATGTTTTCAAGGGGCAGAGCACTGGATAGTCCCTTCTAGGCTGAAGTCTCAGGGAGTGAGGTCCAGGGACAAGAAGGTAACGAGTTCCTGCCTGGGGCGGGCCAG
Seq C2 exon
GCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACTAGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGACAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTGCAGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987:ENSMUST00000072386:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.7=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(49.7=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCAGGGGGATGATGGCT
R:
ATCTCTGGAGGTGAGCAGGAC
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types