RnoINT0092390 @ rn6
Intron Retention
Gene
ENSRNOG00000057645 | Micb
Description
MHC class I polypeptide-related sequence B [Source:RGD Symbol;Acc:1564508]
Coordinates
chr1:79769499-79770129:+
Coord C1 exon
chr1:79769499-79769762
Coord A exon
chr1:79769763-79769965
Coord C2 exon
chr1:79769966-79770129
Length
203 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCCTGCCTGGGTGTGCCAGGCC
3' ss Score
5.97
Exon sequences
Seq C1 exon
GAACCCACACTCTGCGCTATGATGTCACAGCCTGTTTTCTGGAGGGCTCTGAGCAGACCAGGCTCCTGGTCCTAATATACGTAGACGATGAGCTCTTCCTGAGGTACAATGGAGACAGGAGGAGTGCAAAGCCCTGGGCATGCTGGATTAAGGGCCATGGGGGAGATGAGACGTGTACAAGAGAGGCTGAGAATCTGCCGAAGGAGGAGGAGAGACTCAGGGAGATGATGGCTGATATGATAAACCAGAAGGGCCATGACAAAG
Seq A exon
GTGAGTGTTGAGAACCAGAGCTACACAGGTCCCATCTGTGATCACTAAGCCATGATTCTGGGAAGGGCACGGCCAGACTGACTTGAATAAAGCACTAACACTTTCCATGGGGCAGAGCACTGGATAGTCCCTTCTAGGCTGGAGTCTCAGGGAGCTGGGGTCCAGGGACAAGAAGGTGACAAGTCCCTGCCTGGGTGTGCCAG
Seq C2 exon
GCCCATACACTCTTCAGGCAACCCTGGACTGTGAGCTTCAAAGAAACGGAAGCACTAGAGGCTTCTGGCACCTGGGCTACGAAGGGCGGAACCTCCTCACCTTCGACCAGAAGACTCTCACATGGACAATGGATGTGCCCTTCACCCAGCAGAAGAAGACGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057645:ENSRNOT00000083211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.0=98.9)
A:
NA
C2:
PF0012913=MHC_I=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAGGAGGAGTGCAAA
R:
GGGCACATCCATTGTCCATGT
Band lengths:
295-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]