MmuALTA1035072-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000046434 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
Coordinates
chr15:103241040-103244955:+
Coord C1 exon
chr15:103241040-103241327
Coord A exon
chr15:103244225-103244255
Coord C2 exon
chr15:103244256-103244955
Length
31 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
3' ss Seq
TGAGTCTTAATGTGTTTTAGATT
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTTCCAGCCCCTCCGCTAAACACTCCCTCCTCCACTTTAGTCTCCCAAGGAGCCAGAACAGCTGCGGAAGCTCTTCATCGGAGGGCTGAGCTTCGAAACAACCGACGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACACTAACAGACTGTGTGGTAAGATTAAAAGAAACAAAAGGAAGAGCTGGCTTATTTCTTCCGATTTAATCTGCTGCTTCTTAGCTAAATTGTTTTGTGAAGTTAACTAATGGGATGGTAAAAAAAAATCTGGGGCTTTCTTCAGATCT
Seq A exon
ATTAACAACTTTATTCCATATTGTTCAACAG
Seq C2 exon
GAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGTGTGGGCAAAAACTCCAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAAGGTTTTACTGTAGACCTTTTTCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCTTTTTTTTTTTTTTTTTAAATGTGCTGTGTAAAGTTAGTCTATTCTGAAGCCATCTTGGTAAACTTCCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGGTGCCAAGTTCCATTTGGAATTTATTTATGGTTGCTTGGGTGGAGAAGCCATTGTCTTCAAAAACCTTGATGTCGTTAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046434-7-34,7-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGGGGCTTTCTTCAGATCT
R:
CACTGTGCTTGGCTGAGTTCA
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types