HsaALTA1063496-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000135486 | HNRNPA1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
Coordinates
chr12:54282800-54284569:+
Coord C1 exon
chr12:54282800-54282874
Coord A exon
chr12:54284518-54284557
Coord C2 exon
chr12:54284558-54284569
Length
40 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTGAGTCTTAATATGTTTAGATT
3' ss Score
3.06
Exon sequences
Seq C1 exon
GTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATG
Seq A exon
ATTAACAACTTTATTCCATATTGTTCAACAGGAAACAAAG
Seq C2 exon
CTTAGCAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135486-36-30,36-29,36-28,36-27-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains