HsaEX1017015 @ hg38
Exon Skipping
Gene
ENSG00000135486 | HNRNPA1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
Coordinates
chr12:54284258-54287088:+
Coord C1 exon
chr12:54284258-54284317
Coord A exon
chr12:54286662-54286732
Coord C2 exon
chr12:54286953-54287088
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAGGTTGTTTACTTTTCTAGGGA
3' ss Score
7.34
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAATTAG
Seq A exon
GGAGGAGTCTGCTACTAGTCTTATCAGCTCTTAAAAACAGAAACTCATCTGTCCAAGTTCGTGGCAGAAAG
Seq C2 exon
GAACGTCCTTGTGAAGACCTTTATCTGAGCCACTGTACTTCGTTATCACTGCCATGCAGTTTACATGAGCTGTTCTGCAGCTCAAATTCCATTTTGTGAATGGGTTTTTTTTTTTAATAAACTGTATTTAACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135486_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAGCAGCAGCAGTAG
R:
CATTCACAAAATGGAATTTGAGCTGC
Band lengths:
151-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains