RnoEX0042243 @ rn6
Exon Skipping
Gene
ENSRNOG00000036839 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:RGD Symbol;Acc:69234]
Coordinates
chr7:144868935-144871585:+
Coord C1 exon
chr7:144868935-144869000
Coord A exon
chr7:144871269-144871346
Coord C2 exon
chr7:144871448-144871585
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTTTGCTTTTTTAGGAA
3' ss Score
10.99
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGCTATGGAGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAATTACAGCCAG
Seq A exon
GAAGGAATCTGCTATGAGGCTTAACTGCTGTCATAAAATTTGTTTAAAAAACATGCTACAGAAGTTATTGGCTAAAAG
Seq C2 exon
GAACATCCTTAAGAGAAGAGCCTTTATTCTGGGCCACTCTACTACTTCTCACTGCCATGCAGTTGGGTTTTAGCTGTACTGCTAAAAATCATTCAATTTTGTGAATGGCTTACTTTTTTTACAATAAACTTTTTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036839-'24-31,'24-29,29-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAGCAGCAGCAGTAG
R:
AAAAGTAAGCCATTCACAAAATTGAA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]