MmuALTA1035671-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048231 | H2-M10.4
Description
histocompatibility 2, M region locus 10.4 [Source:MGI Symbol;Acc:MGI:1276527]
Coordinates
chr17:36459223-36460264:-
Coord C1 exon
chr17:36460162-36460264
Coord A exon
NA
Coord C2 exon
chr17:36459223-36459323
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGCTACCATCTGTGTCCAGGTC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GGCCTCCACAAACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGTAGCTTTGGTGGTGGGAACTGTGGTGATTTTTCTGGTGTGGAGGAAATAAAG
Seq A exon
NA
Seq C2 exon
GTCTCTGTTTCCTGTAAGTACAACATGAGAAAGTGAGTTCAGCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048231-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACAAACCATCCCCATC
R:
TCAGTGTGGAGGGGAGTCATG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types