MmuALTA1035671-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048231 | H2-M10.4
Description
histocompatibility 2, M region locus 10.4 [Source:MGI Symbol;Acc:MGI:1276527]
Coordinates
chr17:36459223-36460264:-
Coord C1 exon
chr17:36460162-36460264
Coord A exon
chr17:36459324-36459395
Coord C2 exon
chr17:36459223-36459323
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCATTATTTCCTTCTAATAGTGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GGCCTCCACAAACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGTAGCTTTGGTGGTGGGAACTGTGGTGATTTTTCTGGTGTGGAGGAAATAAAG
Seq A exon
TGTGAAGATATCTGACTTGGGTGACATCAAAAGCTCCTTACTTTTCTTTCAATGGCTACCATCTGTGTCCAG
Seq C2 exon
GTCTCTGTTTCCTGTAAGTACAACATGAGAAAGTGAGTTCAGCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048231-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACAAACCATCCCCATC
R:
TCAGTGTGGAGGGGAGTCATG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types