MmuALTA1036000-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123635174-123640554:-
Coord C1 exon
chr5:123640494-123640554
Coord A exon
NA
Coord C2 exon
chr5:123635174-123635278
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
CTCTTCCCTTTTACTAACAGACG
3' ss Score
9.11
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGCGATCTTGAG
Seq A exon
NA
Seq C2 exon
ACGCAGACCAAACTGGAGCATGCCCGCACTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-31-24,31-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.472
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(12.9=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAGGACCTTCAGTTCCG
R:
AGTGTCTTCTAACTCCCTCTGGA
Band lengths:
160-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types