MmuALTA1036194-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129577905-129580111:+
Coord C1 exon
chr6:129577905-129578365
Coord A exon
NA
Coord C2 exon
chr6:129579937-129580111
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCATTTTTGTCTTTATAAAGATG
3' ss Score
5.55
Exon sequences
Seq C1 exon
CACACACACACACACACACACACACAGAGGCACACACACACATCATTCTCATGCCATTCTGACTCGATTGTGTTTAAGCTGTGGTTCCAGAGAGTCATATATGACATTGTAGTGAAAATGTTCTTATGGGAATGGAATATTTGATTACATCAATGTTTGCTTGTTTTTTTTCAAGATCCATGACTTGCTGTGCCTGGGAATGAATGCACAGCCTCATGAGTATTGAGTAGTGGATGGACACATGATCTTACTTGAGTTTTAAGCTATGCTCTCACCCATATTATGGGTGCTAAACGGAAATGTAAAGCATTAGTGAGGACTTTGCTATGGGGCTGTGAAGTGTGATCAAGCAGCTTCCTCCCCTGTTCCCAGTTCAGTCTTACATATCCTGCTCCAGACCCTGCTGATTAGCACATATTAAAGTTTTAACATCTGTGCCTGGAATTCCCTCTTTGCTTCAG
Seq A exon
NA
Seq C2 exon
ATGGATGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTCAAATGAATTGTCATCCATTGAGCAGAGGAAAAAATACCAGAAACATCTTAAGAAGCACAAAAACACAGCAGAAGACATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.842
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAGACCCTGCTGATTA
R:
GGTAGAACGGGTTACAGGTGC
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types