MmuEX1015941 @ mm10
Exon Skipping
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129577905-129580117:+
Coord C1 exon
chr6:129577905-129578365
Coord A exon
chr6:129578765-129578889
Coord C2 exon
chr6:129579918-129580117
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTCCCAATCTACAGAAA
3' ss Score
7.63
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACACACACACACACACACACACACAGAGGCACACACACACATCATTCTCATGCCATTCTGACTCGATTGTGTTTAAGCTGTGGTTCCAGAGAGTCATATATGACATTGTAGTGAAAATGTTCTTATGGGAATGGAATATTTGATTACATCAATGTTTGCTTGTTTTTTTTCAAGATCCATGACTTGCTGTGCCTGGGAATGAATGCACAGCCTCATGAGTATTGAGTAGTGGATGGACACATGATCTTACTTGAGTTTTAAGCTATGCTCTCACCCATATTATGGGTGCTAAACGGAAATGTAAAGCATTAGTGAGGACTTTGCTATGGGGCTGTGAAGTGTGATCAAGCAGCTTCCTCCCCTGTTCCCAGTTCAGTCTTACATATCCTGCTCCAGACCCTGCTGATTAGCACATATTAAAGTTTTAACATCTGTGCCTGGAATTCCCTCTTTGCTTCAG
Seq A exon
AAATCAATGACAGACCAAAGTAACGATACTACAACTTCCAGCTTGGTATGGTGACTTTCAGATATAACAATTTTCACAGGAAAGCTTCTCTGGAACCTGAGTCACAAACAAGTGATGGCATTCTG
Seq C2 exon
CATTTTTGTCTTTATAAAGATGGATGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTCAAATGAATTGTCATCCATTGAGCAGAGGAAAAAATACCAGAAACATCTTAAGAAGCACAAAAACACAGCAGAAGACATCAGTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.842
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGTTCCCAGTTCAGTC
R:
TCCTCTGCTCAATGGATGACA
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types