MmuALTA1036972-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140530753-140533995:+
Coord C1 exon
chr1:140530753-140530824
Coord A exon
NA
Coord C2 exon
chr1:140533866-140533995
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GAATTTTTATCAAAGCCTAGATG
3' ss Score
-1.2
Exon sequences
Seq C1 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq A exon
NA
Seq C2 exon
ATGATTTGCTCAGGTGTGGAGTGACCTTTGCTGCCAACATGGTGGTGGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-37-38,37-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGCAATCTGTTGGTTTCCA
R:
ATGTTGGCAGCAAAGGTCACT
Band lengths:
95-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types