MmuALTA1039054-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29499125-29501290:-
Coord C1 exon
chr6:29501202-29501290
Coord A exon
chr6:29499219-29499469
Coord C2 exon
chr6:29499125-29499218
Length
251 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCCCCTTTTTTTTATATAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCTCAGGCTGCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTG
Seq A exon
GAACACTAGCTCATGTTGGATTAGGGGGACAGCCTACTCCAATAATACCCCACTAACTAACCACATCTTCAACTCTGTTTTCAAAAGAGATCACGTTCTGAGGTACCAGTGCCAGCCATTTCAACCTACAAATCTGGAGGGATACATTTCATTCCATGAGAACACCCAGTGAGTGTACGGCTGGGAGTCTAGTGCCATTTCTCTTTCTTGACTGAACTCTGGGGGGTCTCTCCTCTGCCTACCCTTACCAG
Seq C2 exon
GAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCACCTGTTGCCCGGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-11-21,11-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=86.7)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCTGCACAGAAGGGAA
R:
GTCACACACCGGGCAACAG
Band lengths:
181-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types