RnoALTA0020305-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56777581-56780259:-
Coord C1 exon
chr4:56780171-56780259
Coord A exon
chr4:56777675-56777933
Coord C2 exon
chr4:56777581-56777674
Length
259 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGAACCTGACTTTCTCATAGGAA
3' ss Score
7.12
Exon sequences
Seq C1 exon
CCTCCGGCTGCACAGAAGGTCACTCTCACAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTG
Seq A exon
GAACACTAAGTCATGCTGGATTAGGAGGACAACCTACTCCAGTGATACCCCACTAACCTACTGTATCGTCAACACTGTTTTCAAAAGAGATCACATTCCGAGGCACCAGAGGCAGCCGTTTCAACCTACAAATCTGGAGGGGTGTATTTCATTCCATACAAACACCCAGGGAGTGTATGGCTGGGAGTCTAATGTCATTTCTCTCTCTTGGCTGAACTCTGGGGGTCGGGGGGGTCTCTCCTTTGCCTACCCTTGCCAG
Seq C2 exon
GAGGGGCACATCCAGTGCCGCCAGCAGGAGTGTGCCAGTCTTTGTCCATACCCTGCCAGGCCCCTTCCGGGTACCTGCTGCCCAGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=86.7)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGCTGCACAGAAGGTC
R:
GTCACACACTGGGCAGCAG
Band lengths:
180-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]