MmuALTA1039161-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80879722-80882762:+
Coord C1 exon
chr10:80879722-80879963
Coord A exon
NA
Coord C2 exon
chr10:80882652-80882762
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAGCCTTCTTCTCCGCACAGGGC
3' ss Score
7.93
Exon sequences
Seq C1 exon
GGCCAAGTGTGGCTGAATGTCAGATAAATCCTTTGTCCATTTTTTGTTCTTTTTCTCTTGCAGGTGTCTAGCTGGAGCTTACCTTTGCCGAGCCATGGAGCCCACTGCACCAGACTTACAACTTGTGCCAGAGGTGACAAAGGCTGTCTCTGTATCTGCTCCAGACCCTGGCCCTTGTCGAACGGCTGTCATCGCAGTGGTGGGCATCAGCATGGCCATCGTGACCCTGGGAGTCCTTTCAG
Seq A exon
NA
Seq C2 exon
GGCGCCCACGTGGAGCACATAGCAGAGCTACATGGGATCCGTTTCACCAGTTCTTTGCAGCAGGAGAACTCTGACTTCTACCGCCTACTCACGCATGCTCTGCAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-1-7,1-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139015=SEA=PU(33.3=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTGGGAGTCCTTTCAG
R:
ATGCGTGAGTAGGCGGTAGAA
Band lengths:
117-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types