MmuALTA1039708-1/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061232 | H2-K1
Description
histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
Coordinates
chr17:33996376-33996654:-
Coord C1 exon
chr17:33996616-33996654
Coord A exon
NA
Coord C2 exon
chr17:33996376-33996476
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCATGACCCTCATTCTCTAGCGT
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCTCCCAGACCTCTGATCTGTCTCTCCCAGATTGTAAAG
Seq A exon
NA
Seq C2 exon
CGTGAAGACAGCTGCCTGGAGTGGACTTGGTGACAGACAATGTCTTCTCATATCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGTCAAGTGTCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061232-18-29,18-28,18-27,18-26-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PD(46.2=85.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGACCTCTGATCTGT
R:
AACTGAGGGCTCTGGATGTCA
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types