MmuEX1014385 @ mm10
Exon Skipping
Gene
ENSMUSG00000061232 | H2-K1
Description
histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
Coordinates
chr17:33978254-34000333:-
Coord C1 exon
chr17:34000194-34000333
Coord A exon
chr17:33997038-33997155
Coord C2 exon
chr17:33978254-33978523
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTACCTGTCCTTCCCAGAGCCT
3' ss Score
-0.44
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGTCGCCGCGGACGCTGGATATAAAGTCCACGCAGCCCGCAGAACTCAGAAGTCGCGAATCGCCGACAGGTGCGATGGTACCGTGCACGCTGCTCCTGCTGTTGGCGGCCGCCCTGGCTCCGACTCAGACCCGCGCGG
Seq A exon
CCTCCTCCATCCACTGTCTCCAACATGGCGACCGTTGCTGTTCTGGTTGTCCTTGGAGCTGCAATAGTCACTGGAGCTGTGGTGGCTTTTGTGATGAAGATGAGAAGGAGAAACACAG
Seq C2 exon
GCTCACACTCGCTGCGGTATTTCCACACCGCCATGTCCCGGCCCGGCCTCGGGGAGCCCCGGTTCATCGCTGTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGGATGGAACCGCGCGCGCCATGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGGTCGCCAAGAACACGGAGCAGATTTCTCGAGTGAACCTGAGGACCCTGCGCGGCTATTACAACCAGAGCGAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061232_MULTIEX1-4/11=C1-8
Average complexity
C3
Mappability confidence:
75%=100=79%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.073 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF066236=MHC_I_C=PU(7.7=4.9)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGCAGAACTCAGAAGTC
R:
CGGTTCCATCCTCGGATTCTC
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types