MmuEX0022272 @ mm10
Exon Skipping
Gene
ENSMUSG00000061232 | H2-K1
Description
histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
Coordinates
chr17:33996616-33997157:-
Coord C1 exon
chr17:33997038-33997157
Coord A exon
chr17:33996827-33996859
Coord C2 exon
chr17:33996616-33996654
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACAGCTTTTCTTCTCACAGGTG
3' ss Score
9.69
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGCCTCCTCCATCCACTGTCTCCAACATGGCGACCGTTGCTGTTCTGGTTGTCCTTGGAGCTGCAATAGTCACTGGAGCTGTGGTGGCTTTTGTGATGAAGATGAGAAGGAGAAACACAG
Seq A exon
GTGGAAAAGGAGGGGACTATGCTCTGGCTCCAG
Seq C2 exon
GCTCCCAGACCTCTGATCTGTCTCTCCCAGATTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061232-'15-25,'15-23,17-25
Average complexity
S
Mappability confidence:
100%=80=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.639 C2=0.143
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(7.7=4.9)
A:
PF066236=MHC_I_C=FE(42.3=100)
C2:
PF066236=MHC_I_C=PD(46.2=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCTCCAACATGGCGA
R:
ACAGATCAGAGGTCTGGGAGC
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types