MmuALTA1040318-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134513996-134516278:-
Coord C1 exon
chr5:134516081-134516278
Coord A exon
chr5:134514090-134514099
Coord C2 exon
chr5:134513996-134514089
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGGCCTTGCTCTGGGTCAGTAT
3' ss Score
3.59
Exon sequences
Seq C1 exon
CTCACAGAGACCTCTTCGCGCTATGCCCGGAAGATCTCAGGCACCACAGCTCTGCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAACAGCTGCTGGCTGAGCGCGACTTGGAGAGAGCCGAAGTAGCCAAGGCTACCAGCCATATCTGTGAGGTGGAGAAGGAGATCGCCCTGCTGAAGGCACAGCATGAGCAG
Seq A exon
TATGTTGCAG
Seq C2 exon
AAGCCGAGGAGAAGCTGCAGCGGGCACGGTTGCTGGTGGAAAACGTGAGGAAAGAGAAGGTGGATCTGTCCAATCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-20-12,20-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF116003=CAF-1_p150=FE(34.2=100)
A:
NA
C2:
PF116003=CAF-1_p150=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGGAGAAGGAGATCGC
R:
TTCCTCACGTTTTCCACCAGC
Band lengths:
98-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types