RnoALTA0009247-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25208853-25210634:+
Coord C1 exon
chr12:25208853-25209050
Coord A exon
chr12:25210531-25210540
Coord C2 exon
chr12:25210541-25210634
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGGCCTTGCTCTGGGTCAGTAT
3' ss Score
3.59
Exon sequences
Seq C1 exon
CTCACAGAGACCTCTTCACGCTATGCCCGGAAGATCTCAGGCACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAGCACATCGAACAGCTGCTGGCTGAGCGTGACTTGGAGAGGGCAGAAGTAGCCAAGGCTACCAGTCATATCTGTGAGGTGGAGAAGGAAATTGCCCTGCTGAAGGCACAGCATGAGCAG
Seq A exon
TATGTTGCAG
Seq C2 exon
AAGCTGAGGAGAAGCTGCAGCGGGCACGGTTGCTGGTGGAAAACGTGAGGAAGGAGAAGGTGGATCTGTCCAATCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-11-9,11-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGAAATTGCCCTGC
R:
TTCCTCACGTTTTCCACCAGC
Band lengths:
93-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]