MmuALTA1040433-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000063535 | Zfp773
Description
zinc finger protein 773 [Source:MGI Symbol;Acc:MGI:1923623]
Coordinates
chr7:7135292-7136724:-
Coord C1 exon
chr7:7136433-7136724
Coord A exon
chr7:7135378-7135418
Coord C2 exon
chr7:7135292-7135377
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
AGCATTCTCTGTTGTGGCAGGGT
3' ss Score
5.12
Exon sequences
Seq C1 exon
GGAAAGGAAGGGGGTAAAGAAAGGGGTAGGAGAGCATTGGGACTTAATGGTTGCGTGCAGGTGATTATCTTTCTGGATGCTTGTGTCAGGTCAGAGGAAAACTGGTTTTACAGCTCTCTGTCCAGAACTGGAAGGCGCGAGAGGAGCGAGGCTTTGTCCTCTAGCAGACCGTTTTGAAGTCTACGAGGACCCCGTGTGGTTGGTTGCAGGCCTGGAAAGAATAGCCATGTCCACGGACCCAACTGCCCAGCAAAATCAGACTGCAGTAGCTCTGCAGGGTGGCCAGGCACAG
Seq A exon
GGTGGTATGGCCTTTAGTGATGTGGCTATCTACTTCTTGAG
Seq C2 exon
GGGGGAATGGAGACTACTTGATGACTCTCAGAGGCGTCTGTACCACCAGGTGATGATGGAGGTCTTTGTTCTCATGTCCTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063535-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCAGGCCTGGAAAGAAT
R:
GGTACAGACGCCTCTGAGAGT
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types