MmuALTA1042169-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:63982613-63983350:+
Coord C1 exon
chr4:63982613-63982754
Coord A exon
NA
Coord C2 exon
chr4:63982855-63983350
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
GAATATCCCTTCATCAGCAGTCC
3' ss Score
2.73
Exon sequences
Seq C1 exon
ATCCCACTGTTGCTATGGCACCTGCTTGTTTACAGTACCTGTTGTTGCTATGGCACTGACTGGCTGGGATCGCCTTCCGCGGCTTATTCCATAGAGTTCAATTTCGTACTCAGTGGCCTCTCTGAGACCTGTTATGTCCCTG
Seq A exon
NA
Seq C2 exon
TCCAGGACAGACGGAAACCGTCTGGAGTGGCATCTGAAACTAGAAGGTTGTCAACTTCCGGTTCAGCTTCTAGAGGGAGAGAAGATGGTGGAAGAAGGAGGAGACAGAGCATTAATTAGCCATCCATGCAGTCTTCCTTCTGGTGGAGTATCAGAATGCAGTGCTGCCTCGGTTTTCAGAGACAGAGTGTCCTGAGATACCAGGAAAGAAAATCATTCCACATTAAAAAAGTCTAGTAGGGGGAGGAGAAGGAAAACACGGAGCTGACACATTCAATACAAGCCAAGCATTCGCTTGCATCTGTGAGTTTTGTCTAAAAGTAACTGTATCAGTCCACATCTGGACTCGGCCTTGGCCCCTCCCGTGCATTATTAAACAAGTTCAAAGCCATAACTTGTTTACATTTGCTCTTTGTCTTCCAGTGGCTGAGTGCTGGTCTGCTGGGAGCTCCTTTTCTTTTCCTTTTGAAAAGACAAATAAACCGACTTTAATGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821-1-4,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTCTCTGAGACCTGTT
R:
CCCTCTAGAAGCTGAACCGGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types