MmuEX1002436 @ mm10
Exon Skipping
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:63979854-64024073:+
Coord C1 exon
chr4:63979854-63979989
Coord A exon
chr4:63982852-63983156
Coord C2 exon
chr4:64023976-64024073
Length
305 bp
Sequences
Splice sites
3' ss Seq
GTCGAATATCCCTTCATCAGCAG
3' ss Score
0.41
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGGAGTTTGCCCAGATCATTGGCTAGCCACTTGCTTGCACTGCCTTCCTTGCTGCTCTGGATTCTCAAGGGTGGGCAGCTTATAGCCAGACAGAAATATGTTACAAGGAGGAATCACAGCAGACCATTACCAGGAG
Seq A exon
CAGTCCAGGACAGACGGAAACCGTCTGGAGTGGCATCTGAAACTAGAAGGTTGTCAACTTCCGGTTCAGCTTCTAGAGGGAGAGAAGATGGTGGAAGAAGGAGGAGACAGAGCATTAATTAGCCATCCATGCAGTCTTCCTTCTGGTGGAGTATCAGAATGCAGTGCTGCCTCGGTTTTCAGAGACAGAGTGTCCTGAGATACCAGGAAAGAAAATCATTCCACATTAAAAAAGTCTAGTAGGGGGAGGAGAAGGAAAACACGGAGCTGACACATTCAATACAAGCCAAGCATTCGCTTGCATCT
Seq C2 exon
GTACATACATGGAATATCCTGGACTCGGATAGACAACAATGACTCTACTTTTTCAAATGCGGATGAACTTGTTTCCACATCATTTTGGCAACTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTTGCCCAGATCATTGG
R:
AGAGTTGCCAAAATGATGTGGA
Band lengths:
231-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types