MmuALTA1043003-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000079492 | Gm11127
Description
predicted gene 11127 [Source:MGI Symbol;Acc:MGI:3779381]
Coordinates
chr17:36056046-36056439:-
Coord C1 exon
chr17:36056326-36056439
Coord A exon
chr17:36056147-36056161
Coord C2 exon
chr17:36056046-36056146
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTTCCTTCTTTTCTCACAGCTT
3' ss Score
10.87
Exon sequences
Seq C1 exon
AGCCTCTTCCATCCACCGACTCTAACATGGTAATCATTGCTGCTCTGGTTGTCTTTGGAGCTGTGATCATCATTGGAGCTGTGGTGGCTTTTATGATGAAGAGGAGAAACACAG
Seq A exon
CTTTTCTTTTCACAG
Seq C2 exon
GTGGAAAAGGAGGGGTCTATTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079492-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGAGCTGTGGTGGCTTTT
R:
TGTCAGCGCCATCTTGTAACG
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types