MmuINT1011215 @ mm10
Intron Retention
Gene
ENSMUSG00000079492 | Gm11127
Description
predicted gene 11127 [Source:MGI Symbol;Acc:MGI:3779381]
Coordinates
chr17:36055816-36056439:-
Coord C1 exon
chr17:36056326-36056439
Coord A exon
chr17:36056147-36056325
Coord C2 exon
chr17:36055816-36056146
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CACAGCTTTTCTTTTCACAGGTG
3' ss Score
9.7
Exon sequences
Seq C1 exon
AGCCTCTTCCATCCACCGACTCTAACATGGTAATCATTGCTGCTCTGGTTGTCTTTGGAGCTGTGATCATCATTGGAGCTGTGGTGGCTTTTATGATGAAGAGGAGAAACACAG
Seq A exon
GTAGGAAAGGGCAGAGTCTGTGTTTCCTCTCAGGCCCTTTTAGAAGTGTGCTCTGCTCATCAATGGGAAACACAGCCGCACCAATCATTGCTACTGTCTTTAACCTGCGTCTGTATCCATTCTGTAAATTTCCTAGAGTTAGACTCTTCCTTCTTTTCTCACAGCTTTTCTTTTCACAG
Seq C2 exon
GTGGAAAAGGAGGGGTCTATTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGATGTAAGAAATAAAGCTTTGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079492:ENSMUST00000113742:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCCATCCACCGACTCT
R:
GGGAAGGCAGAGCACAAGTAG
Band lengths:
255-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types