MmuALTA1043118-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000084819 | Gm11967
Description
predicted gene 11967 [Source:MGI Symbol;Acc:MGI:3650297]
Coordinates
chr11:5915315-5916596:+
Coord C1 exon
chr11:5915315-5915396
Coord A exon
chr11:5916334-5916495
Coord C2 exon
chr11:5916496-5916596
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGAGCGGATTTCTGTCTCAGCCA
3' ss Score
1.6
Exon sequences
Seq C1 exon
GATGAAGTGGCTGGAGCTAGCCCACTCACATGCCCCCTTCCAGACTTGTTACAGAAGATGATGATCGGATGCTTTGAAACAG
Seq A exon
CCAGACTGCGCATGAGCAGCAAGCATCCTCCCAGAACATGTCCCAGGGCGTGGTCTCTTTCCAGTCACTGCACCTTTGAGGGAAGAATGGGATCTAGTTGGCTAAGCACCCAGGACAACTCTGGCAACTCACCGCCCCCCCCTGTGAATCCACCTCGTCCAG
Seq C2 exon
GAGTACCATTCTGCAGTAAGGACACGTAGCTCGATGTTCTTCCTACACTCAACAGTCACGACTGGAGAGGAGGGGACAGGACAGAAGGTGCCTTAGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084819-0-3,0-2,0-1,0-0-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGTGGCTGGAGCTAGC
R:
TCCCTAAGGCACCTTCTGTCC
Band lengths:
181-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types