MmuEX6083800 @ mm10
Exon Skipping
Gene
ENSMUSG00000041798 | Gck
Description
glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Coordinates
chr11:5906683-5950081:-
Coord C1 exon
chr11:5949555-5950081
Coord A exon
chr11:5909083-5909202
Coord C2 exon
chr11:5906683-5906778
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACACTGGTGCAACTCCTAGCTC
3' ss Score
2.32
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATCTACTCCACACCTGGTTGGAACAGAAGCACCGACTGTGACTGAGCCCAGAGAAGAAAGCTGAGGCGTGAGGGACAGAGAGTTACCTGTTGCCTCATTACTCAAAAGCCATCCCCAAGCCACTGGAGGGAGAGACCTTTTGTGCTGAGTCCGTCTAGAGGCCACCAGTTCCTCACAGCTCAGCAGAGCTGGAAGAAAGTCAGTCAACACTGAGGAACCACATGGCTCCTCCTGAAGACCGCTGGGCCTGAAGAGGCCTTGGTGGGGAGGGGTCCAGAAGTGAACAATGAAAAAGAGGAAGCTGTGGCTTCAACCAGCCTGAGGTGGACGGCAGAGCTCTCTGAGGTCCGGGGCTGGCTGTGACTCTGTGGGGGAAGTCTGGGCTACTTCTGCTTTGGAAAGCTGCTGCGGAACACTGAGGGGTCCCAGCTCACCTGGGCTGGCGGCTGGGCAGATGCTGGATGACAGAGCCAGGATGGAGGCCACCAAGAAGGAAAAG
Seq A exon
CTCTTTGACTACATCTCTGAGTGCATCTCTGACTTCCTGGACAAGCATCAGATGAAACACAAGAAACTACCCCTGGGCTTCACCTTCTCCTTCCCTGTAAGGCACGAAGACATAGACAAG
Seq C2 exon
GGCATCCTGCTCAACTGGACCAAGGGCTTCAAGGCCTCCGGAGCAGAAGGGAACAACATCGTGGGACTTCTCCGAGATGCTATCAAGAGGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041798_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(2.4=33.3)
A:
PF0034916=Hexokinase_1=FE(18.8=100)
C2:
PF0034916=Hexokinase_1=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGGTCCAGAAGTGAACA
R:
GTCCAGTTGAGCAGGATGCC
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types