GgaEX6047300 @ galGal3
Exon Skipping
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10834577-10836575:+
Coord C1 exon
chrUn_random:10834577-10834636
Coord A exon
chrUn_random:10834814-10834933
Coord C2 exon
chrUn_random:10836480-10836575
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCAACCATTGCCTTTCAGCTC
3' ss Score
6.81
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GATATGGAGAGCCAGATCTACGAGACCTTTAAGGACCTCATGCGAGGCAGTGGGATGCAG
Seq A exon
CTCTTTGACCACATCGCCGAGTGCCTGGGCAACTTCATGGAGAAGCTGAAAATCAAGGACAAGAAGCTGCCCCTTGGCTTCACCTTCTCCTTCCCGTGTCACCAGACCAAGCTGGATGAG
Seq C2 exon
AGCATCCTCGTCAACTGGACAAAGGGATTCAAGTGCAGCAGCGTGGAGGGGAAGGACGTGGTGTCCCTGCTGCGCAGGGCCATCAAAAAGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(9.2=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCCAGATCTACGAGAC
R:
CTTTTTGATGGCCCTGCGCA
Band lengths:
146-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]