RnoEX0042014 @ rn6
Exon Skipping
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113577453-113582765:-
Coord C1 exon
chr4:113582617-113582765
Coord A exon
chr4:113578244-113578363
Coord C2 exon
chr4:113577453-113577548
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGCTTGTGTCCTTAGCTG
3' ss Score
8.94
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AACATGGGGAGTTCCTGGCTCTGGATCTTGGAGGAACCAACTTCCGTGTGCTCCGAGTAAGGGTGACGGACAATGGCCTCCAGAGAGTGGAGATGGAGAACCAGATCTACGCCATCCCTGAGGACATCATGCGGGGCAGTGGAACCCAG
Seq A exon
CTGTTTGACCACATCGCCGAATGCCTGGCCAACTTCATGGACAAGCTACAAATCAAAGAGAAGAAGCTCCCTCTGGGTTTCACCTTCTCGTTCCCCTGCCACCAGACAAAACTGGATGAG
Seq C2 exon
AGTTTTTTGGTCTCGTGGACTAAGGGGTTCAAGTCCAGTGGCGTGGAAGGCAGAGATGTGGTGGACCTGATCCGGAAGGCTATCCAGCGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGGGAGTTCCTGGCTC
R:
CCCTCTGCGCTGGATAGC
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]