MmuEX6005029 @ mm10
Exon Skipping
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82743945-82749337:-
Coord C1 exon
chr6:82749189-82749337
Coord A exon
chr6:82744862-82744981
Coord C2 exon
chr6:82743945-82744040
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTTTGTGCCCGTAGCTG
3' ss Score
10.65
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AACATGGCGAGTTCCTGGCTCTGGACCTTGGAGGAACCAACTTCCGTGTGCTCCGAGTAAGGGTGACAGACAATGGTCTCCAGAGGGTGGAGATGGAGAACCAGATCTACGCCATTCCCGAGGACATCATGCGGGGCAGTGGAACCCAG
Seq A exon
CTGTTTGACCACATTGCCGAATGCCTGGCCAACTTCATGGACAAGCTACAGATCAAAGAGAAGAAGCTCCCGCTGGGTTTCACCTTCTCGTTCCCCTGCCACCAGACGAAACTGGATGAG
Seq C2 exon
AGTTTCTTGGTCTCATGGACTAAGGGGTTCAAGTCCAGTGGCGTGGAAGGCAGAGATGTGGTGGATCTGATCCGGAAGGCCATCCAGCGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-'16-8,'16-7,18-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGCGAGTTCCTGGCTC
R:
TCTGCGCTGGATGGCCTTC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types