MmuEX6005029 @ mm9
Exon Skipping
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82693939-82699331:-
Coord C1 exon
chr6:82699183-82699331
Coord A exon
chr6:82694856-82694975
Coord C2 exon
chr6:82693939-82694034
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTTTGTGCCCGTAGCTG
3' ss Score
10.65
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AACATGGCGAGTTCCTGGCTCTGGACCTTGGAGGAACCAACTTCCGTGTGCTCCGAGTAAGGGTGACAGACAATGGTCTCCAGAGGGTGGAGATGGAGAACCAGATCTACGCCATTCCCGAGGACATCATGCGGGGCAGTGGAACCCAG
Seq A exon
CTGTTTGACCACATTGCCGAATGCCTGGCCAACTTCATGGACAAGCTACAGATCAAAGAGAAGAAGCTCCCGCTGGGTTTCACCTTCTCGTTCCCCTGCCACCAGACGAAACTGGATGAG
Seq C2 exon
AGTTTCTTGGTCTCATGGACTAAGGGGTTCAAGTCCAGTGGCGTGGAAGGCAGAGATGTGGTGGATCTGATCCGGAAGGCCATCCAGCGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGCGAGTTCCTGGCTC
R:
TCTGCGCTGGATGGCCTTC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: