DreEX0037689 @ danRer10
Exon Skipping
Gene
ENSDARG00000101482 | hk2
Description
hexokinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2017]
Coordinates
chr5:13398379-13414922:+
Coord C1 exon
chr5:13398379-13398527
Coord A exon
chr5:13406613-13406732
Coord C2 exon
chr5:13414823-13414922
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCCCATTTTCTTTTCCAGCTC
3' ss Score
11.42
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAACTGGTGACTTCCTTGCCCTGGACCTGGGAGGAACCAATTTTCGGGTTCTGCTTGTCAAGGTGTCCAGTAATGGAATGCAGAAAGTGGAGATGGAGAACCAGATCTATGCCATTCCAGAGAACATCATGAGGGGCTGTGGGTCTGAG
Seq A exon
CTCTTCGATCACATAGCCGAATGTTTGGCCAATTTCCTTGAAAAACTGGGCATCAAAGAGAAGAAGCTGCCTCTTGGCTTCACCTTTTCATTTCCTTGCCAGCAGACCAAACTAGATGAG
Seq C2 exon
GACTTTGACATTGACATTGTAGCAGTGATCAATGACACCGTTGGCACCATGATGACCTGCGGTTATGATGACCATCACTGCGAAATTGGCCTCATTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101482_MULTIEX1-2/12=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGTGACTTCCTTGCCC
R:
CGACAATGAGGCCAATTTCGC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]