BtaEX0017181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9743787-9749583:-
Coord C1 exon
chr11:9749435-9749583
Coord A exon
chr11:9744483-9744602
Coord C2 exon
chr11:9743787-9743882
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTGTGCCCTTAGCTG
3' ss Score
9.05
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AACATGGAGAGTTCCTGGCTCTGGACCTTGGAGGGACCAACTTCCGTGTGCTTTGGGTAAGAGTAACAGACAATGGACTCCAGAAGGTTGAGATGGAGAGCCAGATCTATGCCATCCCCGAGGACATCATGCGAGGCAGTGGCACCCAG
Seq A exon
CTGTTTGATCACATTGCTGAATGCCTGGCCAACTTCATGGATAAGCTACAAATCAAAGATAAGAAGCTCCCTTTGGGTTTTACCTTCTCGTTCCCCTGCCTCCAAACAAAACTAGACGAG
Seq C2 exon
AGTTTCCTGGTCTCGTGGACCAAGGGGTTCAAGTCCAGTGGTGTGGAAGGGAAAGATGTGGTTACTCTGATCCGGAAGGCCATCCAGAGGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.1=100)
A:
PF0034916=Hexokinase_1=FE(19.2=100)
C2:
PF0034916=Hexokinase_1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGAGTTCCTGGCTCT
R:
CTCTCCTCTGGATGGCCTTCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development