MmuALTD1027282-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041798 | Gck
Description
glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Coordinates
chr11:5910278-5911020:-
Coord C1 exon
chr11:5910914-5911020
Coord A exon
chr11:5910862-5910913
Coord C2 exon
chr11:5910278-5910432
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
ATCTCTCCCTTTGCCTGCAGAAG
3' ss Score
10.35
Exon sequences
Seq C1 exon
AGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAAGCTGGAGACCCATCAGGAG
Seq A exon
GCCAGTGTAAAGATGTTGCCCACCTACGTGCGTTCCACCCCAGAAGGCTCAG
Seq C2 exon
AAGTTGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGGGTGATGCTGGTGAAAGTGGGGGAGGGGGAGGCAGGACAGTGGAGCGTGAAGACGAAACACCAGATGTATTCCATCCCCGAGGACGCCATGACGGGCACTGCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041798-8-6,9-6,10-6,11-6-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGAGACCCATCAGGA
R:
TCTGGTGTTTCGTCTTCACGC
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types