MmuALTD1027282-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041798 | Gck
Description
glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Coordinates
chr11:5910278-5911020:-
Coord C1 exon
chr11:5910914-5911020
Coord A exon
NA
Coord C2 exon
chr11:5910278-5910432
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCCAGT
5' ss Score
-0.05
3' ss Seq
ATCTCTCCCTTTGCCTGCAGAAG
3' ss Score
10.35
Exon sequences
Seq C1 exon
AGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAAGCTGGAGACCCATCAGGAG
Seq A exon
NA
Seq C2 exon
AAGTTGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGGGTGATGCTGGTGAAAGTGGGGGAGGGGGAGGCAGGACAGTGGAGCGTGAAGACGAAACACCAGATGTATTCCATCCCCGAGGACGCCATGACGGGCACTGCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041798-8-6,9-6,10-6,11-6-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAAGGAGATGGACCGT
R:
TGAAGTTGGTTCCTCCCAGGT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types