RnoEX6043188 @ rn6
Exon Skipping
Gene
ENSRNOG00000061527 | Gck
Description
glucokinase [Source:RGD Symbol;Acc:2670]
Coordinates
chr14:86155270-86158992:-
Coord C1 exon
chr14:86158838-86158992
Coord A exon
chr14:86157752-86157871
Coord C2 exon
chr14:86155270-86155365
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCCATGCTGCAACTCCTAGCTC
3' ss Score
3.43
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGTCGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGAGTGATGCTGGTCAAAGTGGGAGAGGGGGAGGCAGGGCAGTGGAGCGTGAAGACAAAACACCAGATGTACTCCATCCCCGAGGACGCCATGACGGGCACTGCCGAGATG
Seq A exon
CTCTTTGACTACATCTCTGAATGCATCTCTGACTTCCTTGACAAGCATCAGATGAAGCACAAGAAACTGCCCCTGGGCTTCACCTTCTCCTTCCCTGTGAGGCACGAAGACCTAGACAAG
Seq C2 exon
GGCATCCTCCTCAATTGGACCAAGGGCTTCAAGGCCTCTGGAGCAGAAGGGAACAACATCGTAGGACTTCTCCGAGATGCTATCAAGAGGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061527-'8-11,'8-8,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(44.7=100),PF0034916=Hexokinase_1=PU(2.4=3.8)
A:
PF0034916=Hexokinase_1=FE(25.3=100)
C2:
PF0034916=Hexokinase_1=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTCTCTCCTTAGACCTGGG
R:
CTCTCCTCTTGATAGCATCTCGGA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]