DreEX6051110 @ danRer10
Exon Skipping
Gene
ENSDARG00000068006 | gck
Description
glucokinase (hexokinase 4) [Source:ZFIN;Acc:ZDB-GENE-060825-204]
Coordinates
chr8:40440256-40442086:+
Coord C1 exon
chr8:40440256-40440410
Coord A exon
chr8:40440738-40440857
Coord C2 exon
chr8:40441991-40442086
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTCTCTTCATCTAGTTG
3' ss Score
8.6
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGTTGGTGATTTCCTGGCACTGGATCTTGGAGGGACAAATTTTCGAGTGATGCTTGTGAAAGTGGGTGAGGATGAAGAGCGAGGCTGGAAGGTGGAAACCAAACATCACATGTACTCCATCCCTGAAGATGCCATGACCGGCACAGCTGAAATG
Seq A exon
TTGTTTGATTACATTGCCGGCTGCATATCTGACTTCCTGGACAAACATAATCTCAAACACAAGAAGCTACCACTGGGATTCACCTTCTCTTTTCCAGTGCGTCACGAGGATTTGGACAAG
Seq C2 exon
GGGATTCTTCTGAACTGGACTAAAGGCTTCAAGGCCTCTGGCGCTGAGGGCAATAATGTTGTGGGTCTTCTGAGAGACGCCATCAAAAGAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068006-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.6=100)
A:
PF0034916=Hexokinase_1=FE(18.8=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGTGATTTCCTGGCACT
R:
CCCTCTTCTTTTGATGGCGTCT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]